CyEnce - Available Software
CyEnce nodes run Red Hat Enterprise Linux 6.4 and use TORQUE (PBS) for
resource and job management.
The application of operating system patches occurs as security needs dictate.
All nodes allow for unlimited stack usage, as well as unlimited core dump size
(though disk space and server quotas may still be a limiting factor).
For information on job schedulers refer to the
Managing jobs using the PBS job scheduler Section.
Fortran compiler (ifort)
C and C++ Compilers (icc and icpc)
MPI (Using Infiniband):
Intel MPI with Intel Fortran ( mpiifort)
Intel MPI with Intel C and C++ ( mpiicc , mpicpc)
For information on Intel MPI Library Compiler Drivers refer to Section 2.1 of
the Intel MPI Library for Linux OS Reference Manual.
Performance and Debugging tools
Allinea DDT Debugger (/shared/allinea/tools/bin/ddt)
For information on DDT refer to the Using the DDT Debugger Section.
GNU Debugger (/usr/bin/gdb)
This debugger can be used to debug serial programs written in C and C++.
Intel Debugger (idb, idbc, idbc_mic)
Intel debugger can be used to debug jobs that run on regular Intel CPUs and/or
Intel Xeon Phi Accelerator cards.
Issue 'man idb' on 'share' or 'stream' to find information on this debugger.
MPI Message Passing Library (mpirun MPI Tutorial)
MKL Optimized Scientific Library that includes BLAS, LAPACK and FFTs. Refer to the
Intel Math Kernel Library Link Line Advisor to choose the correct linking options.
Groups are responsible for installing their own group specific software,
since they usually are more expert at the software that is specific to their
discipline. This also allows the groups to install whatever version they
want in their group's directories without affecting any other group on the
system, and to update on their own schedule without having to wait for a
system administrator to do it.
If help is needed to install a specific software please contact